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@youyifong, is [this line](https://github.com/CoVPN/correlates_reporting/blob/623b03084c73a1080f8b33c1e3e470c2e280cd96/data_clean/make_dat_proc.R#L51) correct or should it be `EventIndPrimaryD57`?
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While working on the transcription guidelines paper we have noticed some inconsistencies with the refactored transcription regulator definitions and subclasses.
@colinlog @RLovering and I have mad…
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@grst What a great tool, very much needed and appreciated! Thank you.
Towards making this better still and more enduring (including for VDJ biologists), I have a few comments/suggestions:
### A…
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While working on #103 (after #98 broke the alpha example) we got hit by inconsistent handling of 'common' and 'unique' (renamed in #103) parameter sets (see discussion there for context).
The (new)…
cjayb updated
3 years ago
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How do people usually refer to the 3 different MAPK cascades?
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This term is a bit crazy
GO:0050901 leukocyte tethering or rolling
seems to combine a function 'tethering" and a process "rolling" (if it is actually a process (sounds like cell migration?)
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Due to the limited abilities of the labelers (including me), the classification model was trained only on English (and some other Latin-based languages) examples. Hence, citations based on non Latin m…
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In "An Introduction to modeling neural dynamics" by Borgers, section 20.2, the synaptic current is defined as:
```
I_syn = g_bar_syn * s(t) (V_rev - V_post)
dq/dt = (1+tanh(V/10)) / 2 * (1-q) / tau…
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Hi Gregor,
I stumbled upon some ValueError when executing `ir.tl.clonotype_network`.
Essentially I do
```
adata_tcr = ir.io.read_10x_vdj(data_path + '/filtered_contig_annotations.csv')
ir.pp.…
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minimap2 -t 70 -ax map-ont -p 0.99 Homo_sapiens.GRCh38.cdna_all.ncrna.fa combined_T.fastq > E6.sam
samtools view -h E6.sam | awk ' ( $5 > 0 || $1 ~ /SQ/ ) ' | awk ' ( $2 == 0 || $1 ~ /SQ/ ) ' | awk '…