-
I am working with ldpred2 in Databricks Platform.
Databricks has a tool called the local file API that abstracts cloud sotrage (Azure data lake, AWS S3, Google Cloud storage), allowing files to be …
-
We have recently realised that we get some artifactual peaks due to sequencing artifacts. Sometimes read2 contains a poly-G tail that is wrongly mapped to a specific genome region that has in fact a l…
-
To whom it concerns,
I have met a cituation as following:
wzq@nanodisco:~$ nanodisco preprocess -p 40 -f dataset/seameta_data/20180609_1025_sea_meta_9_wzq/ -s seameta_9 -o analysis/preprocessed_…
-
In order to support more distros, it would be great to have one of the above. There's surely a way to publish those with a CI at every release. Hopefully it will reduce the size of the executable too …
ghost updated
2 years ago
-
**Describe the bug**
ProgressReportNumber in the Milestone Tracker is not showing milestones 3 and above for some studies.
**To Reproduce**
Steps to reproduce the behavior:
1. Go to projectLive-…
-
Hello,
We are performing a SVT on a binary trait using SAIGE 0.44.6.4 using whole-genome sequencing data. In the second step (step2_SPAtests.R) we use a VCF file as an input and run analyses per chro…
-
Hi there,
I am using the CRISPRessoWGS function to evaluate the genome-wide off-target events in CRISPR/Cas9. Aligned and sorted bam file of whole-genome sequencing data and potential off-target regi…
-
Hi, Jeff,
I have DNA methylation data generated from whole genome bisulfite sequencing. I want to correct unknown batch effect in my data, but encountered error message `Error in eigen(t(resid) %*% r…
-
Hi, I generated the data using 109 genomes. As per the theory, the persistent genes must be present in all the genomes under study. I got 1600 plus persistent gene families, however, the matrix file s…
-
#### Are you using the latest version of [samtools](https://github.com/samtools/samtools/releases/latest) and [HTSlib](https://github.com/samtools/htslib/releases/latest)? If not, please specify.
sam…