-
**Motivation**
Medical imaging is one of the main use cases for semantic segmentation (heck, [U-Net](https://arxiv.org/abs/1505.04597) was actually invented to perform Biomedical Image Segmentation!)…
-
A new addon for an medical imaging viewer shall be added.
The viewer addon shall support:
- basic 2D viewing with standard tools
- 3D/4D viewing with specific tools
- measurements handling
- segm…
-
**Submitting author:** @nathandecaux (Nathan Decaux)
**Repository:** https://github.com/nathandecaux/labelprop
**Branch with paper.md** (empty if default branch):
**Version:** v1.2
**Editor:** @likea…
-
Hello,
I think the **label_image** is not able to show the segmentation in **view** function in itk 3.5.0. Is there a working example of **view** with **label_image** that I can run in colab? I a…
-
**Is your feature request related to a problem? Please describe.**
Cellpose natively supports 3D segmentation; we have so far used it in "pseudo 3D mode", where you segment each z-slice separately, a…
-
Hi, Thanks for the wonderful work!
May I ask could you provide more data for testing? including more 2D slices, and more interesting, 3D volume for testing.
Best,
-
In the preliminary version of the practical 1, I try to cover following topics:
- [ ] Introduction to Imaging-Based Spatial Transcriptomics (Xenium Platform)
- Overview of Xenium technology and it…
-
Here I summarise and expand discussions with @akreshuk and @lorenzocerrone.
In general, the user interface should have sequential layout and minimal options. Here are some details:
### Logic Fix…
-
Here are useful ressources to look into:
- Our lab metrics definition: https://github.com/ivadomed/MetricsReloaded
- Panoptica: [Panoptica -- instance-wise evaluation of 3D semantic and instance se…
-
### Model description
I would like to add a new model:
Proposed in the paper: [UNETR: Transformers for 3D Medical Image Segmentation](https://arxiv.org/abs/2103.10504)
UNEt TRansformers (UNET…