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When you run the docker version, v1.0:
docker pull mrbradley2/clinsv:v1.0
sampleInfo.txt:
NG130ECKCK rg lb /app/input/NG130ECKCK.bam
I also had to make links to the bam files within the alig…
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Sorry for the continuous questions, and I'm really at the beginning stage of spatial transcriptomics.
I aligned my confocal image (Z-stack OME TIFF file) with the Xenium dataset in Xenium Explorer.…
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### Discussed in https://github.com/scikit-bio/scikit-bio/discussions/1973
@mortonjt @wasade Will appreciate your thoughts!
Originally posted by **qiyunzhu** March 17, 2024
Here I am descri…
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- [ ] Range Selector https://lottiefiles.github.io/lottie-docs/text/#text-range
- [ ] Alignment Options https://lottiefiles.github.io/lottie-docs/text/#text-alignment-options
- [ ] Follow Path https…
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The download app section has poor or no css , there are uneven gaps,
uneven alignment and these is an image that does not exist in the given path.
![Screenshot (170)](https://github.com/khushi-josh…
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Hi Mikko,
Do you have a method to convert the graph alignment for a single read into a [GFA Path line](https://gfa-spec.github.io/GFA-spec/GFA1.html#required-fields-5)? I want to visualise individ…
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Hi!
I've installed PSite and been trying it out for a couple of days now. Unluckily, I'm not getting past the very first "train" step. As found in the documentation, the train command takes these i…
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Hello,
I am using STAR to do the alignment prior to TE quantification with TEcount and TElocal. I am using the following parameters in STAR:
```
STAR --runThreadN 100 \
--genomeDir $genome_path \
…
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Hello,
As the tite suggests i am trying to restart a run using the --resume flag as i had to stop my inital run on a HPC. I am confused as to what the resume flag needs to restart the run? I am cu…
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Hello,
I am using the latest version of colmap and attempting to use the colmap model aligner. The output is identical to the original model, it doesn't appear to be to be doing anything at all. I'…