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KCCG
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ClinSV
Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
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bigwig.q0.xxx errors out run ends
#66
tollecr
opened
1 week ago
1
Issue when building the docker image (ERROR [30/39])
#65
avp65
opened
2 weeks ago
5
annotate.main.joined.e exist status: 6400
#64
yougulianren
opened
1 month ago
0
IGV hg38 fix
#63
akiss-me
opened
3 months ago
11
Adding v1.0.1 changes to v1.1
#62
J-Bradlee
closed
4 months ago
0
The igv.xml file outputted when using the grch38 ref genome is incorrect as it is based on grch37. Provide the appropriate igv.xml file dependent on ref genome.
#61
J-Bradlee
opened
4 months ago
0
No dots/lines in the coverage by chromosome view (CBCV)
#60
Bin-Guan
opened
5 months ago
2
Offer a Successful singularity def file
#59
fish2022Jul
opened
5 months ago
0
Small issues in README: wrong instructions for running clinsv1.0
#58
sunjh22
opened
7 months ago
1
No Docker image
#57
HudoGriz
closed
2 months ago
4
Unable to download reference data from s3 bucket
#56
TonyLupara
closed
2 months ago
7
Dev clin sv v1.0.1
#55
drmjc
closed
1 year ago
0
Unable to download human genome reference data GRCh38
#54
sttongjai
closed
1 year ago
13
***** error exist status != 0 (35072), please check /app/project_folder/alignments/FR05812606/bw/sh/bigwig.q0.FR05812606.e for more information
#53
mxiong2
opened
1 year ago
1
Correct use of BWA MEM?
#52
avanbeelen
closed
1 year ago
1
Error in Lumpy.depth.joined.sh in ClinSV v0.9: "Illegal division by zero at /opt/clinsv/clinSV/scripts/add-depth-to-PE-SR-calls.pl line 130."
#51
avanbeelen
opened
1 year ago
2
problem when -p project dir given as relative location
#50
EricDeveaud
opened
1 year ago
1
master display 0.9 as version info
#49
EricDeveaud
opened
1 year ago
2
Running clinsv for annotation and prioritization on called sv from other tools
#48
Shruti-BioCode
closed
11 months ago
1
Dev clin sv v1.0.1
#47
drmjc
closed
1 year ago
1
clinsv :: incorrect perl - shell escape
#46
EricDeveaud
opened
1 year ago
0
Use of Docker Image in Illumina Connected Analytics Unclear
#45
DarioS
closed
1 year ago
2
nci.space :: download problem
#44
EricDeveaud
closed
1 year ago
4
igv/sample.xml file writes wrong reference genome (37 instead of 38)
#43
OlenaMaiakovska
opened
1 year ago
2
more processes than available cores
#42
EricDeveaud
opened
1 year ago
9
exist status: 256 run on cnvnator stage
#41
OlenaMaiakovska
opened
1 year ago
1
INSTALL_b38.md :: ClinSV requires python2 AND python3
#40
EricDeveaud
opened
1 year ago
1
Error (exit status:256)
#39
tomlodz
opened
1 year ago
4
clinSV singularity issues
#38
RichardCorbett
opened
1 year ago
5
Why i get "-1" in the column "PAF1KG"
#37
Sh1von
opened
1 year ago
0
exist status: 512
#36
vicrocodile
opened
1 year ago
3
exist status 256 in lumpy.caller.joined
#35
jezdip1
opened
2 years ago
6
wigToBigWig error
#34
gneedle1
closed
2 months ago
5
No linked file for gene list
#33
melnel000
closed
1 year ago
1
Currently there is no support for hg19 style chromosome names for v37 or v38 reference genomes. We should provide support for this.
#32
J-Bradlee
closed
2 years ago
0
[ENH] Support for hg19 style chromosome names
#31
J-Bradlee
closed
1 year ago
2
Pipeline adaptation to improve results for African genomes
#30
melnel000
closed
2 months ago
4
Unable to download reference data
#29
melnel000
closed
2 years ago
7
[ENH] Be able to switch between ref b37 and b38
#28
J-Bradlee
closed
2 years ago
1
[ENH] ClinSV v1.1.0
#27
J-Bradlee
opened
2 years ago
4
Potential support for CRAM input
#26
HudoGriz
opened
2 years ago
6
Sampleinfo.txt error
#25
gneedle1
opened
2 years ago
9
Docker v1.0
#24
J-Bradlee
closed
2 years ago
1
ClinSV script stops at the first step # Create sample info file from bam files ...
#23
jordimaggi
closed
2 years ago
11
lumpy.caller.joined_1-15.sh: line 6: readLArr[]: bad array subscript
#22
halessi
closed
2 years ago
8
GIAB reference file for sensitivity
#21
wishvaherath
closed
2 years ago
2
the folder structure not configured correctly ?
#20
ChengguoShen
opened
2 years ago
0
the folder structure, not configured correctly
#19
ChengguoShen
closed
2 years ago
0
ClinSV suitable for nanopore data?
#18
mantonglaw
closed
2 years ago
3
useful tools, but could it be used for hg19 or other genome build?
#17
lxsbch
opened
2 years ago
5
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