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Hello, I would like to see which specific exons undergo alternative splicing for these genes. Taking SE.MATS.JCEC as an example, I’m currently using the Ensembl website to examine all transcripts of t…
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Can present STAR outputs from this pipeline support "psichomics" package for **Alternative splicing**?
Additionally there is a new bioconductor package IsoformSwitchAnalyzeR, but it uses outputs o…
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Hi,
Recently I'm trying to use EVM to annotate my genome. Since I'm a freshman for gene structure annotation, I didn't get any alternative splicing events from the final GFF. I searched for the manua…
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Hi,
I'm curious as to why to different samples using the same GTF file have different content in the fromGTF.*.txt files. I was on the impression that this was the ensemble of alternative splicing…
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Hi, [Kallisto/BUSTools was recommended by Seurat](https://github.com/satijalab/seurat/issues/2813#event-3222404304) to perform RNA isoform/alternative splicing analysis. However, I didn't find the re…
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https://doi.org/10.1101/104869
> Advancements in sequencing technologies have highlighted the role of alternative splicing (AS) in increasing transcriptome complexity. This role of AS, combined wit…
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Hello!
I use GRCh38 reference in my work. Could you provide Alternative Splicing Events annotations for this reference or tell how can I make it? I need annotations for Intron Retention.
Many than…
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Hi @EricKutschera , I am currently using rMATs-turbo to detect alternative splicing events between two conditions. From the recently published paper, "A large scale binding and functional map of human…
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Thanks for your tools! There are 2 sample groups with 3 BAM files per group，but I am counfused with the results, how to filter for differential alternative splicing between the experimental group and …