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Hi author,
Thanks for developing this brilliant isoform analytical tool!
May I ask where could I find the splice junctions of annotated isoforms and the types of alternative splicing events fro…
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Can present STAR outputs from this pipeline support "psichomics" package for **Alternative splicing**?
Additionally there is a new bioconductor package IsoformSwitchAnalyzeR, but it uses outputs o…
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Hi,
Recently I'm trying to use EVM to annotate my genome. Since I'm a freshman for gene structure annotation, I didn't get any alternative splicing events from the final GFF. I searched for the manua…
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Hi, If I only need to obtain the AS count for a single sample (experimental group or control group), I execute this command: rmats.py --b1 b2.txt --gtf isoquant_gffcompare.gtf -t paired --bi ./STAR_bi…
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Hi, [Kallisto/BUSTools was recommended by Seurat](https://github.com/satijalab/seurat/issues/2813#event-3222404304) to perform RNA isoform/alternative splicing analysis. However, I didn't find the re…
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https://doi.org/10.1101/104869
> Advancements in sequencing technologies have highlighted the role of alternative splicing (AS) in increasing transcriptome complexity. This role of AS, combined wit…
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Hello!
I use GRCh38 reference in my work. Could you provide Alternative Splicing Events annotations for this reference or tell how can I make it? I need annotations for Intron Retention.
Many than…
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Thanks for your tools! There are 2 sample groups with 3 BAM files per group,but I am counfused with the results, how to filter for differential alternative splicing between the experimental group and …
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Need to curate some alternative transcript examples for Chado loading
can do some from the gene expression list:
gene expression, alternative splicing (3)
gene expression, alternative transcri…