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Dear Rob!
I have a new question here! After running ibdmix, I'm seeking guidance on how to filter the results for unusually long Denisovan introgression segments. Previous research indicated that ind…
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Proteomics:
Goal: Wrap up proteomics methods
- [x] Take data cleaning analysis w/ preprocess step that separates out somascan and TMT, see effect of domain adaptation before combining vs combined @ak…
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Dears,
I am working with the Rye algorithm for genetic ancestry analysis and need guidance on a few points:
Configuring Reference and Query Samples: How do I designate samples as reference or qu…
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Dear eMAGMA team,
I've found that the link provided to download the Genome1000 reference file is not working. Could you please share African ancestry genome 1000 reference file so that I can run eMAG…
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Currently, for MSK IMPACT, we have mutations, CNAs and fusions/SVs, but we have many additional types of derived data generated by CMO.
- Mutational signatures
- HLA types
- HLA LOH
- Genomics-i…
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Hello:
RFMIX v2.03-r0 - Local Ancestry and Admixture Inference
(c) 2016, 2017 Mark Koni Hamilton Wright
Bustamante Lab - Stanford University School of Medicine
Based on concepts developed in RFM…
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I was trying to upload data:
http://localhost:8000/contract/dataUpload/
{
"estimate":true,
"description":"ds",
"link":"http://link.com",
"no_restrictions":false,
"open_to…
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Like discussed in last night's GA4GH call, I'd like to propose opening up discussion on how to include ethnicity in phenopackets 2.0.
My impression from the discussion was that simple enumeration o…
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Dear Liu Lab,
Hi~, I'm using EAS eQTL data and I don't have ancestry-matched GWAS data. So I want to use TESLA to conduct TWAS analysis, but I'm not sure about the input of the GWAS data. Here are my…
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