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## Checklist
- [x] I've searched the project's [`issues`](https://github.com/foundation_image_biomarker/foundation-image-biomarker/issues?q=is%3Aissue).
## ❓ Question
Dear Suraj:
T…
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Hi, I was trying to run test_association analysis and I encountered following problem:
Exception: R package "mgcv" is necessary for testing feature association to the tree
Please install it and try …
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Hello,
I am trying to run Burden test and I'm running into the following error
`vtools associate variant aff -m "LogitRegBurden --alternative 2" -j1 --to_db logit > all.asso.res
INFO: 127 sample…
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Hi team,
I am trying to build a pipeline for fine-mapping with Susie. My results are sometimes off. I'll describe about my input data and what are the issues I am facing, please help me resolving t…
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Given a binary trait run a chisq/fisher against (a) the genotypes or (b) the missing.
I use this as a qc step to help get rid of extreme artefacts before association testing at the gene level.
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We have methods for associating individual genetic variants and phenotypes (https://github.com/pystatgen/sgkit/pull/16, https://github.com/pystatgen/sgkit/pull/66), but inferring associations with gen…
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At current, the `r2()` method for model objects classed `c("mlm","lm")` returns $R^2$ values for both outcomes separately and describes the proportion of variance in each of the separate outcomes.
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Here is an interesting unexpected thing. You can find REGENIE generated extra 4 lines for chr4 (UKB imputed array), rs530960215 is the last SNPs, but I don't know why REGENIE have extra 4 line result …
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Dear Team Members:
Greetings! Our team is very interested in your project. we performed source code perspective security analysis (SCA) and vulnerability library association analysis on this project …
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I did some analysis of the latest association downloads file (2023-10-29) according to the following steps
1. Filtered for associations with no data in on CHR_ID column
2. Filtered on SNPS column f…
ljwh2 updated
2 months ago