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Very strange behavior. I have four ATAC-seq samples across two experimental conditions (two each). For three of the samples, Genrich identifies ~10-30k peaks, but for the other one, it identifies 0. H…
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`wigToBigWig` gives me the following issue when I provide the `.wig` files generated by uniwig (`dev` branch):
```
Missing start= setting line 879394241 of /scratch/bam8pm/tlgl_atac/uniwig_wigs/_cor…
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Hi I’ve been trying to find a tool to do large-scale rapid uniform pre-processing for ATAC data. I thought snATAK through cellatlas would be a good way to do it and started working through your Jupyte…
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1、对于/scripts/ATAC/ATAC_DAP.R文件里最上方的
# path = '/home/sirm/graduation_design/snakemake_folder/Demo_data/ATAC/fragment_file'
# species = 'Hs'
这两个变量的设置是否需要去掉注释，并换成自己的。
（另外在ATAC的其他代码文件里，也出现以上的变量设…
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### Description of the bug
Hi,
I want to ask why I use latesest version, but my results is still macs2, not macs3.
Here is my command line:
```
nextflow run nf-core/atacseq -resume -c nextflow.conf…
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I am facing following error while using macs14
**Command used** : macs14 -t test.bam -c control.bam
**Error**
# ARGUMENTS LIST:
# name = NA
# format = AUTO
# ChIP-seq file =text4.bam
# control file =…
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recently seen: ATAC-Seq_m. - I assume this should be ATAC-Seq_mouse
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[ATAC.pdf](https://github.com/user-attachments/files/16496288/ATAC.pdf)
oipui updated
3 months ago
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Congratulations on the wonderful-looking update on VIA.
This is my first time trying to use VIA (or StaVia), and it seems like the tutorial for [scATAC-seq Hematopoiesis] link is not working corre…