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hi @d0ugal
I hava question about annovar, As we known, the gene structures of eukaryotes and prokaryotes are different. so How to use annovar to annotate the mutations identified in bacterial…
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Hi!
What an amazing package.
I'm trying to display how the mean relative abundance of different bacterial genera develops over time. I filtered for IDs that have samples for all three time point…
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Thank you for making and maintaining dnaapler!
Streptomyces and other genera have linear chromosomes and often also linear plasmids.
Multiple genes on these replicons are located in a conserved…
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[**Minomycin, a depended on antibiotic available at CureTypes**,](https://www.curetypes.com/what-is-minomycin/) is usually used to address various bacterial infections. It belongs to the tetracycline …
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**Describe the bug**
The translation into protein creates an issue when the translation table is set to "11" (bacterial code).
When the start codon is NOT a canonical "ATG" (e.g., GTG), the transl…
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Hello, I am trying to find SV on bacterial genome. I tried use ProcaryaSV and I can not solve this problem from cnvnator.
[B110-LEG3394_L3_cnvnator.log](https://github.com/user-attachments/files/175…
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Hello Team,
I simulated a shotgun metagenomic Nanopore dataset using NanoSim, containing:
65% bacterial sequences from 32 bacterial species
35% human sequences
For profiling, I created a Sylph…
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Dear author, thank you for your software. Plotsr can be used to plot syntenic regions, inversions, translocations regions and duplications regions. But, I couldn't plot large deletions regions betwee…
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Dear team,
Just wonder how I can use this tools for bacterial genomes since bacterial genomes are completely different, model should also be very different.
Thanks,
Jianshu
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Does the current version work to detect bacterial recipients?