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Hi,
On the cluster ACAD1 we have the version 2.19 of bcl2fastq2. Is it possible to install and older version (v1.8.4) [https://support.illumina.com/downloads/bcl2fastq_conversion_software_184.html]…
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At one point, this hyperlink went to a HTML file on GPFS …
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## Summary
I created a plugin which run the following script :
```
/mydata/plugins/run_bcl2fastq.sh .
```
This script run a command which use multithread ( 10 threads here ) :
…
dridk updated
2 years ago
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Although the modules are found in using the module spider command, they are inactive when trying to load them. For example with bcl2fastq/1.8.4
$ export MODULEPATH=/data/acad/apps/modules/all:$MODU…
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Special characters need to be escaped in the samples names.
example
```
BCL to FASTQ file converter
bcl2fastq v2.18.0.12
Copyright (c) 2007-2015 Illumina, Inc.
2019-07-18 09:40:03 [1a90880] …
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Hi,
There is a small bug in the bcl2fastq module.
The `sort` of the sampleID column has a strange behavior.
I think this is a matter of type. It seems that the sort is looking for numbers while sam…
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Currently, we advise users that if they would like to demultiplex files they must first download `bcl2fastq`, move the `.zip` file into the `programs` directory, and then re-build the container. It wo…
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### Description of feature
Future plans for demultiplex workflow:
Attempt to convert into atomic subworkflows:
1. wrap different demux strategies into subworkflows:
- demultiplex_illumina (`bcl-…
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Need to convert the `Demultiplex_Stats.htm` table output by `bcl2fastq` to one or more .csv formatted tables for easier usage and importing elsewhere.
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Hi,
I tried to install your wrapper through conda (https://anaconda.org/bioconda/bcl2fastq-nextseq) to use it in a snakemake pipeline but it fails, as it apparently requires python 2.7 :
`Specificat…