-
BGee ingest is one of our longer to run ingests. Moving this to a modular ingest should improve the overall build of the KG because it can be done asynchronously before the build of the new graph.
…
-
Talking to @fbastian
- They have an RDF dump and also JSON but it may be fine to keep using TSV although we may need to switch to their H5AD
- they have someone actively working on improving th…
-
Using Project Infinity and got the error below from maybe a typo in the setup file:
//[E:…
-
We used to include a TSV of all anatomical homologies. This is useful for users and also for us (e.g. to coordinate with Bgee if we plan to obsolete a term that may be in the table)
This used to be…
-
Field sex contains several times female for Bgee datasets
-
Greetings, @WillScarlettOhara!
Last year I updated the BGEE Denoised Areas, but it's for EET only. Not compatible with BGEE. I recommend hosting this as a separate repository on your GitHub. I r…
-
based on https://www.gibberlings3.net/forums/topic/31281-cahirs-eet-epic-run-mod-order-help-request/
there are many components covered by BGEE v2.5
BG1 Unfinished Business
0: Ice Island Level T…
-
We made a mistake in labeling late/middle/aged stages. In our ontologies, we have:
```
late adult stage
middle aged stage
aged stage (mapped to UBERON:0007222 late adult stage)
```
But UBE…
-
from the .tp file, it only runs on ~bgee~
but EET doesn't list this mod as compatible
https://k4thos.github.io/EET-Compatibility-List/EET-Compatibility-List.html
therefore if I install this mod o…
-
In GitLab by @fbastian on Jan 22, 2018, 16:23
We need to prepare Bgee for release 14.0 (or .1?). Things that come to my mind:
* Extensive testing
* ~~put somewhere some "archive" links?~~
* ~~re…