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Hiya，
When I run `snakemake -j 64 --use-conda` with example data, I ran into this error:
localrule antismash:
input: intermediate_files/annot/syringae_UMAF1029_O/Pseudomonas_syringae_UMAF1029…
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**Is your feature request related to a problem? Please describe.**
Rust-bio contains the ability to provide easy %GC with a simple command but what about the other interesting parameters
**Descri…
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dev 1.11.3 bio 2.1.11 helm 2.1.1
Data: [sample_FASTA](https://dev.datagrok.ai/f/System.AppData/Bio/samples/sample_FASTA.csv)
To reproduce:
1. Delete some values in the Sequence column.
2. Go to B…
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Hello, I have installed bio_embeddings with 'pip install bio_embeddings-0.2.2-py3-none-any.whl', and when i try to run the notebooks/embed_fasta_sequences.ipynb,it shows me:
ImportError: cannot impo…
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Hello,
I am having some trouble running gotcha on my custom inputs. I setup gotcha using conda, so I believe that all my dependencies are properly installed. However, whenever I try to run gotcha o…
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**Describe the bug**
When running the command, it gets towards the bottom of the process but then errors saying the it could not open the index file. This is a resulting GFF file from MAKER output.
…
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## Expected Behavior
I try to transform PDB structures into 3Di sequences. For mini3di (https://github.com/althonos/mini3di/), I used
```
pdb_path = "1xso.cif"
# mini3di
from Bio import PDB
if p…
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To be able to compile the BIOS without ANSI escape sequences for terminals not supporting it.
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Thanks for sharing this crate with the community Jeff. It looks really clean!
I have some suggestions for additional codecs to support masked sequences. Of course, I can easily just implement these…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_imp…