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* [x ] I agree to follow the [Code of Conduct](https://github.com/jgraph/drawio/blob/dev/CODE_OF_CONDUCT.md) that this project adheres to.
* [ x] I have searched the issue tracker for a feature reque…
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[Example iPyNB](http://nbviewer.jupyter.org/github/convexopt/gpkit/blob/phosphorylation/docs/source/ipynb/Phosphorylation%20optimization%20with%20SP.ipynb)
Could in particular be used to optimize / s…
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In SBML spec, there is a definition of 'species':
Species: A pool of entities of the same kind located in a compartment and participating in reactions (processes). In biochemical network models, comm…
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Without error, I am able to call:
`docker pull {copasi image str}`
However, when calling:
`docker run {copasi image str} -i {path to omex}
-o {path to output}`
I am greeted with the follo…
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Inter-omics networks link bio-molecules of different types. They are constructed using biological a priori information showing presence of TF binding sites or H4K12ac epigenetic marks in the promoter …
Sbs12 updated
11 months ago
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### **Glycolysis**
- **Accuracy**: The model correctly represents glycolysis occurring in the cytoplasm, where each glucose molecule is converted into two pyruvate molecules, yielding a net gain of…
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[Graph contrastive learning with augmentations](https://proceedings.neurips.cc/paper_files/paper/2020/hash/3fe230348e9a12c13120749e3f9fa4cd-Abstract.html)
```bib
@article{you2020graph,
title={Gra…
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Hello,
I am not sure whenever this is possible or not?, but I am interested in creating polynomials with parameters.
Say that I have a polynomial with variables
```julia
@polyvar x y
```
and …
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Notes that will come in handy when trying to use MATLAB, Colab, etc. when pertaining to FBAs and GEMs