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Workshop agenda
Introduction and welcome
Noel Burtt, Director of Operations and Development for Knowledge Portals and Diabetes Research, The Broad Institute of MIT and Harvard
Session 1: The 4D N…
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:bug:
### :pencil: Describe the Issue
It seems that due to the way that `merlin_tag`'s are assigned by GAMBIT and the way that the taxon-specific tasks are configured in the merlin_magic subwork…
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### Lesson Title
Snakemake for Bioinformatics
### Lesson Repository URL
https://github.com/carpentries-incubator/snakemake-novice-bioinformatics
### Lesson Website URL
https://carpentries-incubat…
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It would be quite useful if the program was able to handle the `--vntr-bed` being supplied as a `.gz` file compressed with `bgzip` as this allows the same file to be used as elsewhere which require an…
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:cool:
### :pushpin: Explain the Request
This is low priority, but I just realized that the user does not have the ability to change SISTR optional inputs for the various TheiaProk workflows sin…
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### Command description
The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language.
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> CWL is designed to express workflows for data-intensive science, such as Bioinformatics,
> _**Medical Imaging**_, Chemistry, Physics, and Astronomy.
Can someone point me to any examples of medical…
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Bash (Bourne Again SHell) is a powerful command-line interpreter and scripting language that is widely used in bioinformatics for automating tasks and processing biological data. Here are some common …
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Complex bioinformatics workflows usually have dependencies from one step in a workflow to the next. Is there functionality in the pipelines API to handle this? If not, any suggestions on implementat…
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### Lesson Title
Introduction to Bioinformatics workflows with Nextflow and nf-core
### Lesson Repository URL
https://github.com/carpentries-incubator/workflows-nextflow
### Lesson Website URL
ht…