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**Packages that harmonize well:**
BBI (v0.2), BED (v0.3), BGZFStreams (v0.3), BigWig (v0.1), BioAlignments (v3), BioFetch (v0.2), BioGenerics (v0.1), BioSequences (v3), BioStructures (v2), Codecs (v…
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There's a growing ecosystem for handling protein structure in Julia, including two visualization packages https://github.com/MurrellGroup/ProtPlot.jl and https://github.com/BioJulia/BioMakie.jl, neith…
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The following was caught as an unrelated error in a [BGZFStreams.jl downstream test](https://github.com/BioJulia/BGZFStreams.jl/runs/5163487858?check_suite_focus=true).
```
MethodError: no method m…
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Right now, most julia packages making use of these files do so using something like this (taken [from here](https://github.com/BioJulia/BioSequences.jl/blob/master/test/runtests.jl#L46-L51))
```
f…
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MWE:
```
$ export JULIA_CPU_TARGET=generic
$ julia --startup-file=no -q
julia> using HostCPUFeatures
julia> has_feature(Val{:x86_64_avx2}())
static(true)
```
This cause issues during preco…
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Dear @CiaranOMara
I haven't lost track of the existing issues, and will get around to resolving them!
However, I got sidetracked with a more fundamental issue: The BGZFStreams package is slow, …
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Hi all,
@Ward9250 and I had a chat about license choices on gitter. As we move to independent packages, maintainers may want to vary licenses from the default, very liberal MIT license. There are m…
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Hi BioAlignments,
Just wanted to put in a friendly request for API changes to [follow Julia's `@deprecate`](https://docs.julialang.org/en/v1/base/base/#Base.@deprecate) pattern for API changes plea…
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I think we would do the usability of BioJulia a lot of favours if we made it easier to use the file format packages to do the processing of HTS files a la seqtk, samtools etc.
It's currently not as…
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Description: I propose adding a new function molecular_weight() to the BioSequences package that calculates the average or monoisotopic molecular weight of a protein or nucleic acid sequence. The func…