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A bug at biosimulators mentions, that basico does not resolve display names with nested parenthesis:
https://github.com/biosimulators/Biosimulators_COPASI/issues/74
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Model [01186](https://github.com/sbmlteam/sbml-test-suite/blob/7ab011efe471877987b5d6dcba8cc19a6ff71254/cases/semantic/01186/01186-model.m) (steady state metabolic model) is expected to pass in COBRAp…
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---
id: masspy
version: "0.1.6"
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_MASSpy/e17fbc7bdb25623153bfcfa02504a52cef5a7e05/biosimulators.json
specificationsPatch:…
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---
id: vcell
version: 7.7.0.7
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.7.0.7/biosimulators.json
specificationsPatch:
version: 7.7.0.7
image:
url: ghcr.io/vi…
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## Use Case
As an educator, I want a demonstration of tools to make it easy to run simulations in the cloud in order to brainstorm active learning lesson plans for my students that involve authentic r…
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Running the bio simulator, just freezes whenever the `StandardOutputErrorCapturer` is used. When I run without log file, it works, however no output is produced. so
```python
config = bio…
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In revisiting this repository I reran the `test_tellurium` and got a segfault. I have `biosimulators-tellurium==0.1.25`, which came with `tellurium==2.2.2.1`. I confirmed that `test_cobra` still passe…
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@luciansmith Currently there is no release of pyomexmeta for python 3.12, it would be great if this could be added. Especially since it is a requirement for the biosimulators to run.
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### Contact Details
_No response_
### Location
BioSimulations
### What happened?
Reported by @luciansmith
While a simulation is running (see https://run.biosimulations.org/runs/66f1…
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To keep the version of tellurium in BioSimulators up to date, we recommend automating the release of new versions to BioSimulators.
This can be done using the GitHub API.
An easy way to do this…