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**Is your feature request related to a problem? Please describe.**
Brain atlas has been added to the models, let's use it in the schema.
**Describe the solution you'd like**
Use the brain atlas m…
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Terms to Map/Add for class level BG taxonomy
- [ ] 'CN MGE LAMP5 GABA',
- [ ] 'CN CGE VIP GABA',
- [ ] 'SN PVALB GABA',
- [ ] 'CN LHX6 LHX8 GABA',
- [ ] 'STR D1 MSN GABA',
- [ ] 'STR Gra…
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# Context
The following organisms appear in the corpus:
- Callithrix jacchus
- Gorilla gorilla
- Macaca mulatta
- Pan troglodytes
- Sus scrofa domesticus
allowed by the current requiremen…
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Across readme's, tutorials and the website we have a weird mix of upper and lowercase atlas names, e.g. "Allen Mouse Brain Atlas" & "Smoothed version of the Kim et al. mouse reference atlas". We shoul…
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We tried to tilt the atlas for matching a brain section. We activated tilted and changed numbers of affected quadrants and pressed "apply". Nothing happened, the section from the brain atlas remained …
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#### Organoid-Brain v1.0
[Atlas Onboarding Questionnaire - Organoid-Brain v1.0](https://docs.google.com/document/d/1fD9ppTuNa2MOr90tWXssTjlDhFmfgWIVmDhCDXP9K_U/edit)
[Tracker Source Studies ](https…
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I am unable to set the alpha of the brain region added via the alpha argument. Without the argument set one can see with alpha = 1, however, for any other value of alpha, it appears as if alpha were s…
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Related with discussion https://github.com/obophenotype/uberon/issues/3133#issuecomment-2084638914
Complete QC checks and submit following ontologies to OLS:
- https://github.com/brain-bican/mouse_br…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Operating system
- [ ] Linux
- [X] Mac
- [ ] Windows
### Operating system version
Mac OS Version 13.4
###…
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This review is a great collection of MRI based atlases. I am going through it and will add the most significant ones here as issues. I am basing the information on resolution from this paper
https://…