-
The purposes of the two repos could be easily merged, and we'd have one less repo to think about.
-
This is essentially a reply to https://github.com/brainglobe/bg-atlasapi/issues/96, but I'm starting a new issue to track this idea. Sorry for the long post, but interested in your ideas, @brainglobe/…
-
See thread: https://forum.image.sc/t/spinal-cord-atlas-appears-squashed-in-abba-python/96242/15
-
Downloading the atlases can take a long time. In some areas it can seemingly take hours. We should investigate alternatives to improve this, e.g.:
- Move to other providers (e.g. Zenodo https://githu…
-
Write the fused image to a 3D tiff per channel, or a directory of 2D tiffs per channel
-
Rather than using Qt directly, using [these](https://github.com/brainglobe/brainglobe-utils/blob/main/brainglobe_utils/qtpy/dialog.py) would make the code very slightly easier to maintain. By default …
-
The brain globe atlas api is a centralised resource which attempts to index all available volumetric atlases and the related templates and spaces. It is fairly comprehensive for the mouse and the rat …
-
This issue is to start listing features and plans for a general purpose BrainGlobe registration tool. We can discuss here, and then priorities features, turning these into issues and milestones.
**…
-
At the moment there are a lot of tests and I don't know which ones should work or are relevant.
We need to whittle them down to the ones that tell us something interesting (ie; different atlases, di…
-
Training seems to enter an infinite loop, or wait for a callback that's not signalled at the end of an epoch. This causes training to stall at the end of the first epoch.
See https://github.com/bra…