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Hi, nice work on the package!
Later on in my analysis, I need to get the composition of each pseudoreplicate.
I want to do a heatmap of the differentially expressed genes (DEGs) between 2 conditions…
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new application definitions:
- NXapm
new base classes only introduced in this domain:
- NXapm_charge_state_analysis
- NXapm_hit_finding
- NXapm_msr
- NXapm_ranging
- NXapm_reconstruction
- NXapm_sim
…
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### Project short name:
PathogenicVariantsCardiomyopathies
### Primary Wrangler:
Ida
### Secondary Wrangler:
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/…
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Hi there,
I would like to create a workflow similar as the melting protocol, but it is even easier here as we do not have to check for melting or solidification. The workflow is identical to here, …
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**Description of the issue**
As per the message left by Jason [on slack](https://humancellatlas.slack.com/archives/CACM2JCMS/p1697485256722649?thread_ts=1697485243.091859&cid=CACM2JCMS), there are a …
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# Define the cell labels to lift up
group.new = levels(cellchat.E14@idents)
cellchat.E13 The CellChat object will be lifted up using the cell labels FIB-A, FIB-B, FIB-P, DC, Pericyte, MYL, Immune, …
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For visualizing neighborhoods, it would be cool to do a sort of Voronoi tessellation and then extract the edges from the tessellation and color in the corresponding neighborhoods while also plotting t…
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Carraro et al.
Transcriptional analysis of cystic fibrosis airways at single-cell resolution reveals altered epithelial cell states and composition.
https://www.nature.com/articles/s41591-021-01332-…
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Today we chatted a bit about the best way to demonstrate how our results could be used. Currently, I have an example in the manuscript which takes a look at the cell with the maximum impact, and dives…
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Hi, when I tried to change the noise model from the default beta-binomial to Dirichlet multinomial, it didn't seem to work. I wonder what could the solution be as I'm trying to benchmark sccomp agains…