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GO:0038033
positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signaling pathway
GO:0060851
vascular endothelial growth factor recept…
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Hi,in select_branch_cells function why " prob_thresholds - eps < sorted_fate_probs" is true and as a selected cell? How are the selected cells explained biologically?
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The proposal has been made to obsolete terms with the pattern 'signaling involved in x', see https://github.com/geneontology/go-ontology/issues/25766
Note that it is possible that some terms here a…
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If you are interested to get the the annotation as in Fig. 4c, you can download cospar, and run `adata_orig=cs.datasets.hematopoiesis()`, you will get the latest LARRY dataset, and it will include man…
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To replace old ticket #4800
~GO:1904886 | beta-catenin destruction complex disassembly~
GO:2000041 | negative regulation of planar cell polarity pathway involved in axis elongation
GO:2000151 | n…
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### Hi, when I run this code below:
import sys
import cellrank as cr
import scanpy as sc
import pandas as pd
sc.settings.set_figure_params(frameon=False, dpi=100)
import numpy as np
cr.settin…
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Dear all.
I am working on single cell RNA-seq data using your R package: Monocle. While I am performing pseudotime analysis, I have some questions, hopefully you can clear my mind.
By following…
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Hi @flying-sheep ,
Is it possible to set multiple root cells before running pseudotime calculation with palantir?
I have multiple root stem cells in my tissue/data.
Best,
T
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Hello,
Working on design patterns this week - these are proposed textual definitions for cell differentiation and children.
Proposed textual definitions patterns:
- [ ] GO:0030154 cell dif…
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Sorry for the naive question, but what is the difference between fate probabilities and the ancestor probabilities derived from trajectories? I assume cells which show high fate probabilities for a pa…