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**Background**
The script addon.py already have functions for preprocessing, normalization, clustering, cell type prediction, gene list for cells/tissues, gene expression per cell types, DEG per tiss…
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Thank you very much for `bin2cell`.
@ktpolanski is `b2c.view_labels()` in 0.3.2 the unformalized custom function @nadavyayon referred to and was using at 18 minutes and 35 seconds (18:35) in the Se…
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Dear Authors,
I hope this email finds you well. I would like to express my sincere gratitude to your team for developing the tool that has been of great assistance to me.
Currently, I'm facing an is…
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In the preliminary version of the practical 1, I try to cover following topics:
- [ ] Introduction to Imaging-Based Spatial Transcriptomics (Xenium Platform)
- Overview of Xenium technology and it…
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From Chris Shults (+ my edits for gEAR purposes)
gEAR would be most useful for users to compare their scRNASeq or scATACSeq data to for cell annotation. They should directly take the unlabeled clus…
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### If you are filing this issue based on a specific GitHub Discussion, please link to the relevant Discussion.
_No response_
### Describe the goals of the changes to the analysis module.
In …
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Hi,
I'm using xcell2 to perform cell enrichment on RNAseq data. I've tried using the reference sets MouseRNAseqData and TabulaMurisBlood. Here's how I'm calling the analysis function:
xcell_resu…
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### Please link to the GitHub Discussion for this proposed analysis.
https://github.com/AlexsLemonade/OpenScPCA-analysis/discussions/635#discussioncomment-10140478
### Describe the goals of this ana…
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### If you are filing this issue based on a specific GitHub Discussion, please link to the relevant Discussion.
#292
### Describe the goals of the changes to the analysis module.
Now that we have …
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Hello !
I'm performing a multivelo analysis on a complex tissue with more than 10 well-represented cell types. When I perform the analysis on the whole sample, it work just fine.
However, I'm mainly…