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Thank you very much for the data provided on the figshare website, but I found that only the detailed cell annotation was provided in the early_placenta_atac file, and no other RNA or ATAC file was fo…
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**Priority**: high
I previously created maps of the freeform cell type annotations provided by the original scRNA-seq dataset authors onto standardised, ontology-aligned Cell Ontology IDs and names…
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# Cell type 찾기 시리즈 : SingleR | S_beeni's blog
cell type annotation은 single-cell data분석에 있어서 가장 기본이 되는 분석 중에 하나지만 아직까지도 그 방법이 정형화되어 있지 않다.
[https://sbeeniny.github.io/posts/celltype-annotation/](http…
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Hi, Cell BLAST team!
Recently, I wanted to use your method to perform the Cross-species cell type annotation tasks. However, I cannot see any cross-species cell type annotation examples on the [Cel…
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Hi,
I have been using your tool for annotating my single cell data. I have been doing the analysis using your celltype annotation tutorial. I noticed as this process is cell by cell, it might not be …
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Hi Jan,
I am using SPATA2 on a Xenium dataset and used createGroupAnnotations to create the spatial annotation. However, I noticed that the outlines do not capture all the groups I want. In the i…
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老师您好，我在用该软件分析其他物种时，构建了该物种的三个文件，但是在运行Link_pathway_blocks_gwas时，遇到“Start to link gwas and pathway block annotations for 311 pathways!
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Dear scGPT creators,
On the cell type annotation tutorial there is a typo:
At the UMAP plotting:
`In the cell-type annotation task, the fine-tuned scGPT predicts cell-type labels for query se…
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Hi Hsu-Che-Wei!
I am using the COPILOT pipeline, but I have a little problem with the ipynb format file, in the "1-Correlation_Based_Annotation" file in the ln[18] some lines can't be copied
The c…
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Hello,
Please, I am trying to annotate my cells using the GSEA function with I list I generated myself as seen below, but it is throwing errors:
Error in gset[[celltype]]$character :
$ operator i…