-
To do only once PR #12 is merged and issue #11 is closed. Make sure to resync your fork once PR #12 is merged.
**Background**
Many NCBI assemblies include sequences that are circular. For exampl…
-
To do only once PR #10 is merged. Make sure to resync your fork once PR #10 is merged.
**`forgeBSgenomeDataPkgFromNCBI()` will perform the 4 following steps:**
1. Download the FASTA file for the…
-
Hi there,
I keep having an issue with circfull RG not running to completion. It seems to be related to multiprocessing however the error still occurs when I reduce the # of threads. I've done a lit…
-
When trying to forge a new BSgenome data package with `forgeBSgenomeDataPkg()`, the user might sometimes perform several attempts before a successful `forgeBSgenomeDataPkg()` run (typically with some …
-
I tried to use this tool for my cancer pair-end sequencing data from circle DNA enrichment samples. In comparison, circle-map works well. However, as ECCsplorer outputs more robust results and files b…
-
Dear author,
Hi!
When I run the circfull, there was a bug about that "IndexError: single positional indexer is out-of-bounds".
The version of circfull is 0.0.8. Some samples could be a…
-
Dear All,
I installed changeseq via conda (miniconda3). Analysis of the test data seemed ok.
When I analyze my own dataset. The pipeline produced outputs. But in the log, there were warnings obo…
-
Hi,
I've run circlator on my own data, and it looks like it keeps a common k-mer at the ends of a contig, that was produced by SPAdes, after changing start position. Shouldn't circlator remove one …