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Hello,
When I run infer.clonal.models, an error occurred.
y = infer.clonal.models(variants = data,
cluster.col.name = 'cluster',
vaf.col.names = vaf.col.names,
ccf.col.names = ccf.c…
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Hi, I read the your three research papers, These works will surely promote our understanding of tumor evolution.
- The evolution of lung cancer and impact of subclonal selection in TRACERx
- Clonal…
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I get the following output when running the plot.clonal.models pipeline:
> Sample 1: Xvaf Sample 2: dup Using monoclonal model
> Note: all VAFs were divided by 100 to convert from percentage to p…
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Hi,
First of all, thanks for distributing the software.
I generated the input for clonevol using pyclone-vi and ran the 'infer tree' process of the clonevol, but the following error message occu…
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Thanks for the great tool!
We have matched primary and metastatic tumor VISIUM (N=25) with NO matched WGS/WES . We would like to evaluate clonal evolution in our data. Can we or should we run all sa…
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Dear developers,
I want to use CNV to build phylogenetic tree. In infercnv, they do HMM to predict copy state of region then do clonal evolution analysis. But in copykat it still is a cnv score. How …
hahia updated
2 years ago
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Hi, thanks for the wonderful tool you developed!
Can you help me deal with a issue? while I was using your example data from aml1$variants and the code you provided in the manual, everything was fine…
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Hi, Dang, H. X.,
I'm trying to use Clonevol, but I cannot get consensus model when I tried to run "_infer.clonal.model_s".
In this example, I have 6 samples (3 primary, 3 metastasis), and I ran P…
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Hello!
We are working on a longitudinal study of tumour samples (we have samples at different time points for each donor) and we want to analyze their clonal evolution.
We have read in your paper …
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Hi!
I 've recently used SciClone for a sample pair of primary and relapse. In the output table, the are some NA values which, as far as I know, correspond to mutations that are not shared between s…