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I was testing `pipeline_v6.0` branch of `nf-core/oncoanalyser` in targeted mode. `purple` failed as below only for some of the samples. Same [issue](https://github.com/nf-core/oncoanalyser/issues/100)…
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Salut,
J'ai mis le fichier dans Evaluation/Simulated data/vidjil/
à+
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Nina really wants clonality information to be used in our pipeline!
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Look into using VAF to visualize clonality
Will probably need to retain duplicate donor reads/samples to do so
Think about this more
https://www.biorxiv.org/content/early/2018/02/05/260471
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Dear all,
i have a problem with calculating the bcr clonality/entropy running following command:
single_sample_bcr_clonality
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I think currently we exclude all out of frame CDR3s from any part of the analysis after sequence parsing. It's good to exclude these from analysis since they are non-functional, but it is important to…
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'anatomical structure' has this axiom 'existence starts during or after some zygote stage'. This axiom is untrue for the asexual planarian that lacks any ability to sexually reproduce, and therefore, …
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### Select the target metadata schema name (can be multiple), or choose 'Other' if not listed.
Other
### If 'Other' is selected, please enter the schema name below.
AVR
### Describe the change req…
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17_HMM_predHMMi6.rand_trees.hmm_mode-subclusters.cell_groupings contains the results of CNV classification, one column in this file is the category names (1.1.1.1, 1.1.1.2, 1.1.2.1, 1.1.2.2, 1.2.1.1, …
doou0 updated
2 years ago
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We already identify these variant anyway, so it would be helpful to have the option of creating a filter vcf file with just the variants used for calculating frequencies for further analysis such as d…