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Salut,
J'ai mis le fichier dans Evaluation/Simulated data/vidjil/
à+
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Nina really wants clonality information to be used in our pipeline!
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Look into using VAF to visualize clonality
Will probably need to retain duplicate donor reads/samples to do so
Think about this more
https://www.biorxiv.org/content/early/2018/02/05/260471
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Dear all,
i have a problem with calculating the bcr clonality/entropy running following command:
single_sample_bcr_clonality
33Dr updated
10 months ago
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I think currently we exclude all out of frame CDR3s from any part of the analysis after sequence parsing. It's good to exclude these from analysis since they are non-functional, but it is important to…
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17_HMM_predHMMi6.rand_trees.hmm_mode-subclusters.cell_groupings contains the results of CNV classification, one column in this file is the category names (1.1.1.1, 1.1.1.2, 1.1.2.1, 1.1.2.2, 1.2.1.1, …
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'anatomical structure' has this axiom 'existence starts during or after some zygote stage'. This axiom is untrue for the asexual planarian that lacks any ability to sexually reproduce, and therefore, …
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We already identify these variant anyway, so it would be helpful to have the option of creating a filter vcf file with just the variants used for calculating frequencies for further analysis such as d…
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hello,
I just ran some RNASeq data with ImRep. Compared with TRUST and mixcr. Thanks to your wonderful work, this program runs really fast!
But when I tried to the the compare.repertories.py, I …
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Hi, thanks for providing the software.
I have multiple samples and have run TRUST on each of them, but the sequencing depths are different between samples, do you think there is a suitable solution …