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# AlphaFold2 - ColabFold - Colab DB
Standard AlphaFold pipeline using MMseqs2
[https://colab-db.github.io/notebooks/colabfold/](https://colab-db.github.io/notebooks/colabfold/)
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Hi,
First of all, I'd like to thank you for making freely available your software development.
The following command line:
colabfold_batch --templates --amber --num-relax 1 target.fasta --custom-…
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### Description of the bug
`colabfold_local` should work offline as the msa is build by the `MMSEQS_COLABFOLDSEARCH` process and passed to the `COLABFOLD_BATCH` process downstream.
Here is the log:
…
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### Description of feature
Currently, it is consistently organized across tools (structure and naming).
We could implement something like:
mode/
id1.pdb
id2.pdb
complet…
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Colabfold is very similar to alphafold but has some additional features such as the ability to select a specific template to use in predictions. A link to installation instructions is presented here: …
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## Context
I need to create MSAs for a very large set of protein sequences: about 25 million.
I was planning to use the ColabFold workflow. I figured that this would be achievable given the nonlin…
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I found the prediction results are same as ColabFold, then I check the script, found the Colabfold seemed did not incorporate the cycpoem module. Any suggestion or update will be appreciated, thanks!
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Hello Colabfold team,
I started getting this error,
"AttributeError: module 'jax' has no attribute 'linear_util'"
I saw a previous solution which was installing different Jax and jaxlib versi…
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Hello,
The .ipynb script works correctly for .a3m files generated from ColabFold; however, when I try to use the generated files in AlphaFold2 version 2.3, I get the following error message:
Tr…
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When specifying the dependency on colabfold directly, we get a logical trace that explains to us that colabfold 1.5.5 only support python 3.9 to 3.11, while we are on 3.12:
```
$ echo "colabfold==…