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Hello,
I have started using the SME projection plugin in Fiji on confocal microscopy stacks. It works nicely but the output says "SME_projection- Wide -Field". I tried both options (confocal and wid…
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There are four types of data resolution: spatial, spectral, radiometric and temporal. Many instruments can capture one or two types of resolution simultaneously, yet it is rare to find equipment capab…
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Is it possible for this tool to be used to reconstruct higher-resolution images from several 3D stacks acquired using fixed cells (i.e. normal confocal microscopy instead of MFM). Also would it be pos…
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### Zebrafish embryo (broken link, see below)
https://oc.embl.de/index.php/s/gRckFAfkkbrRGQh
Useful to demonstrate image formation issues in confocal microscopy:
1. membranes appear with more…
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Trying to follow the link in the sentence" "We upload a demo data on Google drive: [low light intensity mitochondria imaging by the confocal microscopy](https://drive.google.com/drive/folders/1WiTrL5g…
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# Description
Improved editing for figure metadata.
Status: In development
# Considerations
- Create multiple keywords for a keyword category
- Quickly add a new keyword to an existing li…
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Hi all,
first of all, thanks a lot for bioformats. I'm using it for analyzing confocal laser microscopy data and needed the actual physical pixel size to avoid scale invariance. I added some lines af…
helme updated
6 years ago
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It would be nice if npy2bdv would also offer the option to store data in a different datatype than int16. Maybe the writer could give a warning if data might have been altered? This is the case for an…
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Hello,
I would like to know if it is possible to run the plugin in a headless mode directly in command line or in a macro.
I tried using fiji but I could not fin a way to do it properly. Indee…
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It's a tough balance between being beginner-friendly and introducing too much detail. However, there are a couple things related to mounting media that might be worth including even if they're already…