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Hello CRISPResso Team -
I am currently using the CRISPRessoWGS feature to quantify editing of CRISPR treated samples with 2 sgRNAs. These cut sites are close in proximity - 4 bases apart to be prec…
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### Description of the bug
sample.csv:
```
sample,fastq_1,fastq_2,feature_type
NPC_Astro_Diff_aBeta,NovaSeqX_20240927_LH00181_0041_B22TF5VLT3_bcl-convert_KL_NPC_Astro_Diff_20240916_scRNA_10X_Flex_NP…
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CRISPR systems are classified into types based on which *cas* genes they have. The current [classification system](http://dx.doi.org/10.1038/nrmicro3569) (ping me for pdf) divides CRISPR systems into …
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Hi! Thank you, the analytical workflow you provided is amazing and the most streamlined I could find for GESTATALT-like methods analysis.
I was just wondering at which point in the pipeline script yo…
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**Analysis of tested guide RNA’s used for gene editing via CRISPR to predict optimal future guide sequences**
Despite the apparent simplicity of this sequence matching strategy to target the CRISPR…
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Hello!
I just had a quick question. Looking through the documentation I am a little unclear if knock-knock can be used to analyze CRISPR NGS data generated using multiplexed PCR (e.g. multiple ampl…
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@rasi, @gquarter has generated some results from her GO analysis using the splicing CRISPR screen data, see [here](https://cbl-gorilla.cs.technion.ac.il/GOrilla/zctdtiao/GOResults.html). Do you have a…
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Right now the paired counts are inner joined (the default behavior of `merge`).
https://github.com/sheltzer-lab/crispr-screening/blob/1a6f8c1cbe94433e4abfc02d47247ba92c21ade4/bin/extract-reads.py#L…
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We have been working hard on a database and some [cool demos](https://github.com/phageParser/phageParser/tree/master/demos) of analysis you can do with it. Our dream is to build a web front end so tha…
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I am writing to you because I am collaborating in a CRISPR/Cas9 knockout screening analysis. We are using the GeCKO v2 gRNA library and we found that a huge number of gene symbols are outdated. I foun…