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`glob` feature to capture all files with similar pattern is not working on PROOF/ Cromwell.
Here are the inputs and outputs:
Input WDL: `glob_test.wdl`
```version 1.0
workflow GlobTest{
…
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**Is your feature request related to a problem? Please describe.**
When user's workflows fail it would be helpful to display Cromwell output files to help understand where the error occurred
**Des…
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During a recent run we encountered the following errors:
From the cromwell log:
```
Sep 28 16:19:38 obi-immuno-pici-4 java[14038]: 2024-09-28 16:19:38,975 cromwell-system-akka.dispatchers.engine-…
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while running the multi sample code i get this error
multi_sam/cromwell-executions/MitochondriaPipeline/f10932f4-93f7-4b3c-8bea-e5c4e2455827/call-AlignAndCallR2/AlignAndCallR2/1887beac-6a1e-457e-8d…
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see discussion starting at https://github.com/FredHutch/shiny-cromwell/pull/120#issuecomment-2292348057
What do folks think about this? @vortexing @seankross @sitapriyamoorthi
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Hi Janis,
I'm running Janis with Cromwell+Singularity on my Ubuntu box, and I want to scatter in my workflow, but when I do, it tries to run a large number of big jobs all at once. Since my machine…
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@sitapriyamoorthi @vortexing On this line https://github.com/getwilds/rcromwell/blob/main/R/cromwellWorkflow.R#L37 we do
```r
if (meta$status == "fail")
```
Is there some type of job that doe…
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On scg, I'm running
module load caper
module load java
caper run atac.wdl -i https://storage.googleapis.com/encode-pipeline-test-samples/encode-atac-seq-pipeline/ENCSR356KRQ_subsampled.json
…
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Can a feature to reference (cacheCopy) input files from previous PROOF runs possible? It would save a lot of time and memory. Large input files take time to be copied and repeatedly copy if multiple t…
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Bio- OS的部署文档,讲到[Cromwell安装](https://bio-os.gitbook.io/userguide/bu-shu/getting-set-up/bu-shu-bioos#2.3-an-zhuang-cromwell) 那里,提到了两种安装方式。
第一种通过helm安装,之后测试示例的[CramToBam流程](https://bio-os.gitbook.io/u…