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as mention in the [cerise specialization documentation](http://cerise.readthedocs.io/en/develop/specialising.html), `cerise-client` uses [cwltiny](https://github.com/MD-Studio/cerise/blob/8006176fcf72…
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We could provide a visual rendering of process Application Package and workflows using these tools.
Directly with `cwltool`!
https://github.com/common-workflow-language/cwltool/commit/cbc33f3ee9…
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**Describe the bug**
Linux quick start instructions working, but may have issues on Mac.
Take a look and see if reproducible
If it helps, the Ubuntu command-history and versions that worked were
``…
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https://podman-desktop.io/docs/Installation
Probably will have to wait until `cwltool` autodetects podman: https://github.com/common-workflow-language/cwltool/issues/1344
mr-c updated
2 months ago
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Scrape cwltool --debug stderr logs for a step to pull out a given component
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In the requirements, we need to add `InlineJavascriptRequirement`. This line causes cwltool to fail:
https://github.com/genome/analysis-workflows/blob/43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a/definit…
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We should make sure that, even if there isn’t a shared filesystem for a cluster, we don’t have several CWL jobs on the same node trying to simultaneously pull the same Singularity image, because this …
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When we provide the results of Calrissian jobs as a deliverable, we include a RO-Crate that reports provenance of the results produced by the execution the CWL workflow. The provenance report is creat…
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The extensions can be found here:
* https://github.com/common-workflow-language/cwltool/blob/main/cwltool/extensions.yml
* https://github.com/common-workflow-language/cwltool/blob/main/cwltool/exten…
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I was working on another issue and discovered that the example input YAML I was using was outdated and the workflow I was running could be run with Cromwell but not `cwltool`. Before putting out a ne…