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While fixing an Marker image I ran **[link-validator.js](https://docs.api3.org/dev/link-validation.html)** and noticed a lot of broken links
```
Total passed: 2076
Total failed: 32
1 -------…
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Hi, thanks for your very useful tool!
I have read the preprint of the Proseg, and it says: "**Cell morphologies are initialized using a nuclear stain**, then expanded and altered at random until t…
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## Expected Behavior
Dashmate could be used to set up seed nodes for DAPI.
## Current Behavior
Seed nodes cannot be created with dashmate
## Possible Solution
Per discussion on Slack, adding …
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Dear all,
I wanted to see what the current state for acquiring and storing MultiCamera acquisitions. I see that it runs Ok if I set it up correctly from the Engine and Runner side. I don't get two …
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Hi all,
I cannot thank you enough (again) for this software and letting us experiment with it. It is very resourceful and I see in it quite some potential.
My issue is: I am trying to align an i…
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Reported by @lklimek
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Hey there!
Thanks for the useful tool!
I was wondering, do you have any plans to implement support for multi channel fluorescence images (mIF)?
I tested registering an H&E slide with DAPI ( w…
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Hello,
Thank you for a great repo and paper!
We noticed that for Vizgen aspect, creating of polygons (Line 140 - 152: preprocess/vizgen.py) uses the old cell boundaries h5 format. However, we h…
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Hi team,
I wish to use DAPI as image background, overlapped with spatial cell plots (such as the one generated using data.plt.spatial_scatter()). The data is processed with cellbin.
The goal is se…
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I'm looking for even just the simplest case, i.e. fixing a z-location and visualizing x, y coordinates in 2D. I tried naively with spatialdata-plot, i.e. just
`sdata.pl.render_images("image", chan…