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:cool:
### :pushpin: Explain the Request
Some GenBank accessions are unable to be downloaded via the command we currently have in the Assembly_fetch workflow:
```
datasets download genome ac…
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Dear sir,
I met problem in step10
Mapping with Bowtie2 (Langmead and Salzberg 2012, Nat Methods 9(4), 357-9)
Creating reference from contigs
Working with sample 1: A7
Getting raw reads
…
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### Project short name: Chen-Human-ATACseq
### Primary Wrangler:
### Secondary Wrangler:
### Associated files
* Google Drive:
* ingest: [de0bb4b0-b691-46d7-83db-55670f0afc3a](https://contribut…
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Input of definitions and list of values can be found:
https://github.com/pha4ge/Wastewater_Contextual_Data_Specification/tree/main/Template
The following table combines the info from above and add…
edsu7 updated
1 month ago
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### Project short name:
SPAN
### Primary Wrangler:
Arsenios
### Secondary Wrangler:
### Associated files
* Google Drive:
* ingest: [b3938158-4e8d-4fdb-9e13-9e94270dde16](https://contribute.…
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related to FY25 Q1 milestone https://github.com/microbiomedata/issues/issues/522
Assumes records would be in the functional_annotation_agg collection with a prefix of 'PFAM'
example
{
"metagenom…
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Looking at the Parameters.html file:
- `Param$PathToProteinList` is not really clear. Is it a list of proteoforms or accessions that will be flagged throughout the pipeline? Or is it something else? …
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Following on from work done on https://github.com/datacite/corpus-data-file/issues/18 and https://github.com/datacite/corpus-data-file/pull/37 to validate accession numbers and generate reports with v…
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https://doi.org/10.1038/s41586-024-07769-3
Please keep this checklist for curation of a new study.
- [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before cur…
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Add an additional column to the summary risk update CSV listing all accessions in the given directory and indicating whether or not the risk data was updated