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Hello VStrains team, thank you for developing such a great tool, but while using it, I faced the following problem.
I attempted to assemble the complete HIV genome from this sample: [SRR29407826](htt…
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How to check this error? I can't find "spades.log" file.
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Since too many reads just introduce more error edges in the assembly graph, we should add a step for subsampling beofre assembly. [seqtk](https://github.com/lh3/seqtk) would be the obvious speedy cand…
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In our lab we are conducting research focused on drought resistance in tomato species. Recently we were reviewing your paper, which presents a valuable de novo genome assembly for Solanum sitiens. we…
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https://bactopia.github.io/tutorial/
I'm working through the tutorial.
```
# https://bactopia.github.io/tutorial/#build-datasets
bactopia datasets --ariba "vfdb_core,card" --species "Staphyloc…
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Hi All,
I'm not sure that here is the right place to ask my questions, but hopefully one of you could advise me. I'm dealing of assembly of a diploid plant genome with estimated genome size of ~9Gb…
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Hi authors, great paper just a couple of nitpicks in the paper that might make it a little clearer.
1.
To use it you have to provide a set of contigs resulting of a de novo transcriptome assembly…
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Hello,
and thank you for this amazing tool. I am currently examining different methods of hybrid de novo transcriptome assembly.
I constructed various assemblies from mouse data and compared their…
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how to get the final assembly sequence? I guess we need moshmap or moshasm, could you give me an example?
Thanks.
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Hi, in the README for the ONT-PromethION datasets (https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/AshkenazimTrio/HG002_NA24385_son/UCSC_Ultralong_OxfordNanopore_Promethion/) under 'Data…