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### Description of bug
Greetings!
Thank you for the amazing tool. I am having trouble in assembling shotgun metagenomic raw reads of some of the samples. I am not sure what underlying issue is and h…
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### Description of bug
Running pathracer on an assembly graph generated from SPAdes4 and a DNA hmm profile, makes it crash after extracting the unique edge paths.
[test_data.zip](https://github.com/…
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**_Update the implementation and resources for DeBruijn Graph and Greedy Shortest Common Super String Algorithm in README.md_**
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Is there someone working on this ?
The only reference I found is on the [GATB Global Architecture page](https://gatb.inria.fr/gatb-global-architecture/) :
> Wrappers for other languages will be av…
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Dear Developers.
I am performing the assembly step with 15X WGS data (~400 samples) with a reference genome size of ~2.7G. But java reports an error. Is this prompt for insufficient memory?
…
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Apologies if I have missed a setup step. I installed successfully with conda and was able to run the test data fq without issue. If I input a fastq and run the output is empty. I've tried several diff…
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It will be cool to have colored, compacted, de Bruijn graph like here https://github.com/COMBINE-lab/pufferfish
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[Would the Bifrost (I believe it is actually pronounced very similarly to beef roast) colored deBruijn graph structure](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02135-8) pro…
nmb85 updated
3 years ago
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### Description of bug
I'm trying to assemble some viral sequences.
Spades finished with **OS return value: -7**
Running with pair-end input
Besides, when I trying to test using _spades.py --tes…
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Hi,
I have recently tested haploflow on a complex metagenomics dataset, and it seems to be performing very well compared to other tools in producing correctly assembled viral contigs. For testing, I…