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Hi,
I have been facing this weird issue. Evrytime I run the run_ulm function, suddenly all my cores are used and the machine crashes.
This is the code I was trying to run from the CollecTRI packag…
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https://decoupler-py.readthedocs.io/en/latest/index.html
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Hello!
I was following this tutorial (https://saezlab.github.io/decoupleR/articles/pw_bk.html) for pathway activity inference. I have mouse data, so I tried:
`net [2024-08-06 17:16:45] [SUCCESS] …
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Hi, I have been using CollecTRI successfully until recently, when I started receiving the following error:
`decoupleR::get_collectri(organism="human" split_complexes=FALSE)`
> [2024-06-04 21:20:36…
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**Feature description**
A fuse like item that deletes the connections and cables attacthed to it, but instead of disapearing it ejects in the way its facing.
**Feature purpose**
The fuse is good …
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Hello,
I am trying to run decoupleR but have just encountered an error after updating to the most recent version today when using run_ulm or run_mlm:
```R
sample_acts
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Hi, I am trying to please reviewers and provide benchmark statistics for individual TFs.
According to decoupler-py's 'read the docs' page, this should be possible using the argument by='source' in…
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.. or modify python script to use them optionally. With the default values, the tool fails: https://help.galaxyproject.org/t/decoupler-on-anndata-object-from-scanpy-task-fails/12753/3
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I'm unsure exactly how this would be implemented, but if there were procedural decouplers that could detach things such as boosters, some vessels would be much easier to build. The procedural side dec…
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**Describe the bug**
I am making a pseudobulk version of my anndata object, which I have run through .strings_to_categoricals() as a normal cleaning operation (anndata seems to want this).
Howev…
dnjst updated
2 weeks ago