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In this manuscript DAA methods have been benchmarked and a new method was proposed: https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-022-01320-0 we should check if any of these meth…
mlist updated
1 month ago
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I am doing some differential analysis of 16s rRNA data and following code in this vignette:
https://joey711.github.io/phyloseq-extensions/DESeq2.htm
```
sigtab
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After talking to @qiyunzhu , it is becoming clear that skbio would need to have a differential abundance method that can at least provide directionality (i.e. features increase / decrease in abundance…
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Hello,
Thank you very much for developing MIcrobiomeAnalyst, I have enjoyed using it. Unfortunatly since yesterday differential abundance analysis is down on its webserver and I cannot install the R…
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Dear m6A developers.
I wonder if you can advise on the best statistics to perform a differential m6A abundance analysis between two sample groups.
I've already successfully run m6anet v2.1 on my O…
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Hi @sbslee
I am curious to know, are differential analyses tools like lefse, ANCOM, ALDX2, and/or DeSeq2 for microbiota data out of scope for Dokdo?
it would be wonderful to have them in Dokdo, if …
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Dear Yu,
Thanks for the development of this wonderful package, which can help me a lot with the microbiome data analysis. It came an error showed that "Error in get_call(obj, "classgroup") : 缺…
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I can run ggpicrust2 with the provided example data (but not plot it, made a separate entry for that #101) but I am struggling to get it work with my own data.
Here is my code
```r
library(read…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/feargalr/TaxSEA
Confirm the following by editing …
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Dear team MicrobiomeStat,
I am appreciate very much your software contribution. I am new using Lineal Mixed models.
Please can you suggest me If I am used my data correctly.
In my experiment…