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I successfully concluded the WAVE analysis using simulation data based on your comments. I would appreciate it if you could provide specific guidance on how to analyze real experimental data, such as …
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Hi,
AptaSuite asks for using CapR for secondary structures prediction but this program calculates RNA folding. Do you have any suggestions how to involve DNA secondary structure prediction in AptaSu…
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The gro_hash method in `folding/utils/ops.py` encounters errors for certain proteins/DNA. This method is responsible for generating the hash for a specific gro file. It does this by parsing the `.gro`…
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Awhile ago I made a biopython issue mentioning a small bug I saw in the DNA nearest neighbor values. I caught that because I was using biopython's DNA nearest neighbor energies to bootstrap a library …
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This input:
```
{
"entities": [
{
"type": "dna",
"ccd": "TGTCTTTCC",
"count": 1
}
]
}
```
gives
```
Traceback (most recent cal…
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We currently only have rudimentary documentation.
We need to:
- make sure that all public modules, classes, methods, and functions are properly documented
- develop a written guide and tutorials
Thi…
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_Edit: DOI link https://doi.org/10.1007/978-3-319-21233-3_6_
Hi Dr. Greene et al.,
Here is another paper that I found to have a quite interesting premise: https://arxiv.org/pdf/1503.01919.pdf (apolo…
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Dear all
This is not an issue, its more of a question about the results i get when I run the eggnog emapper.
At the output table, when i look at the KEGGs, sometimes there are more than one KEGG I…
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Block-copolymer self-assembly-based nano-patterns with controlled complexity
(복잡도 제어가 된 블록공중합체 자기조립 나노패턴)
좌장 : 이승우(고려대)
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request from @bebatut