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There are two zobas with the same name Māʾkal – LOC4396Maekal and LOC4444Makal – and nothing to set them apart. I wonder if they may be doublets
@DenisNosnitsin1970 @CarstenHoffmannMarburg @eu-geni…
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We need to think about how to fit doublets or to say explicitly that we don't. (e.g., OVI 1032/1038 or CIV 1548/1551 -- cases where the wavelengths of the lines are close [and may be blended, like CIV…
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Now that JSON is used with configuration, we can easily define user-specified custom doublet series for use in analysis mode
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Hi everyone,
I've used Demuxlet since its first release now and I always got constant overestimation of doublets across multiple independent experiments.
Demuxlet predicted doublets percentage with…
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Hi,
I've loved using souporcell for my single nucleus RNAseq analysis. Thanks to Haynes and the team for making such a good program.
On one dataset, though, I saw a result in R* seurat analysis…
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Hello, thank you for the nice tool. Could you provide any example running `Predict_doublets` on a seurat object? It is not clear how I create/encode `marker_array`, `doublets_training`, and `variables…
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thanks for developing loupeR, has worked great for all my Seurat objects to help share data to others
however, i have a seurat object where our collaborator removed doublets with 'singleCellTK'; ho…
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Occasionally, for manuscripts where there is a transcription as an included separate xml file, the script producing expanded XML for mss produces expanded XML also for the other XMLs, resulting in mul…
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I completed the tutorial and two samples of my own without error but now I'm consistently getting this problem with subsequent samples:
```
running souporcell doublet detection
Traceback (most re…
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Shouldn't throw an error and stop, should warn loudly and indicate 0% contributions for whichever mutation type (probably doublets) has zero mutations.