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Karina, below are my issue findings for the EMBL datasets
### Human
The Human Glycosylation Sites (EMBL) [GLY_000888](https://data.glygen.org/GLY_000888) dataset has discrepancy in site and amino …
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**Describe the issue**
RepeatMaskerLib.embl is not built while configuring RepeatMasker-4.1.2-p1 and is requestrd by DateRepeats
```
rpm_maker:RepeatMasker/RepeatMasker-4.1.2-p1 > DateRepeats
I…
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I'm trying to load the results of the batch processing with a mobie table.
For now, I made the table manually, looking like this:
In short:
```
image[TAB]labels
path/to/image.tif[TAB]path/to…
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Hello! I am very new to CRABS, but I am running through my bioinformatics protocol within Linux (terminal) and I have successfully downloaded and run NCBI and BOLD databases through in silico PCR. I d…
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Hi
aspera-cli version 4.18.1
```
ascli faspex package recv \
--url=https://faspex.embl.de/aspera/faspex \
--user='xxx@xxx.it' \
--password='xxx' \
--id=ALL \
--once-only=yes \
--insecure=…
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MoBiE has problems accepting ilastik h5 as "first" image... The following line looks suspicious - or is that fine? I tried with a tif as first image and h5 as "secondary", and this worked fine.
htt…
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**Source** = glygen_upload.csv
**Output** = *_proteoform_glycosylation_sites_embl.csv
**Mapping Files:**
unreviewed/human_protein_masterlist.csv and unreviewed/mouse_protein_masterlist.csv
misc/…
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I am applying strict QC to all glycosylation/phosphorylation/glycation site dataset files, and the filtered out rows are stored in logs/*_proteoform_*.global.log files, and also I have created a scrip…
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EMBL training has schema.org Event annotations
https://www.embl.de/training/events/index.php
njall updated
4 years ago
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Based on #1641. Provide a table with the two columns:
* GlyTouCan ID
* Resource name (e.g. glyconnect, embl)
* if possible the protein and aa the glycan is reported on
for all cases of _glycan_…