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Did you have a chance to explore mapping the gene names to Ensembl IDs?
I'm looking into that now and don't know if there's a recommended way.
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I am wondering if this tool works with genes with ENSEMBL IDs
Flu09 updated
2 months ago
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### This issue was found on Biofilter 2.4.2
I ran pathway annotation on a list of 55889 genes; biofilter ignored 22674 unrecognized identifiers and 114 ambiguous and returned outputs for 18482 uniq…
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## Describe the issue
We use '--shift_3prime 1' that causes the variant's ClinVar CLIN_SIG to be unannotated.
## Additional information
web tools : https://grch37.ensembl.org/Tools/VEP
variant ：…
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**Describe the bug**
At the moment we do not have any good GRCh37 transcript alignments RefSeq or Ensembl.
For GRCh38, we have a refseq transcript and an Ensembl. But the alignment is very differe…
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## Describe the issue
Hello, I'm testing v113 using the v113 docker obtained from docker hub and the v113 cache downloaded using the following command:
`docker run --network host -t -i -v /mnt/data1…
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## Describe the issue
I am getting the following error and I've narrowed it down to a single line VCF:
```
substr outside of string at /opt/vep/src/ensembl-vep/Bio/EnsEMBL/Variation/Utils/Variati…
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* link to support ticket: [#2024102560000545](https://otrsdict.ugent.be/otrs/index.pl?Action=AgentTicketZoom;TicketID=174072)
* website: https://www.ensembl.org/info/docs/tools/vep
* installation do…
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Dear developer, I was trying to download the pep.all.fa files for the species “Conger conger” and “Gymnothorax javanicus” from the ensembl database. But I found that there are no relevant files for th…