-
I am wondering if this tool works with genes with ENSEMBL IDs
-
This Ensembl pipeline is probably one of the largest sources of incorrect IEA annotation.
One major issue that could be fixed is that the relationships appear to be ignored.
So in this case…
-
### Aims/objectives.
Can we link to Ensembl genes _e.g._ http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000188157 ?
### A clear and concise description of todo items.
We need the …
-
First of all thanks that more and more packages are available for arm64. `ensembl-vep` is available as `noarch`. However, it cannot be installed since neither `perl` nor `perl-bio-db-hts` is availble …
-
I am attempting to annotate genomic data based on GRCh37 using Ensembl version 75, as it is the only version suitable for my needs. However, Ensembl version 75 has differences compared to newer versio…
-
Works without issue for all genes that I've tried:
```r
ensembl = useMart("ensembl", dataset = "hsapiens_gene_ensembl")
getSequence(
id = gene_id$ensembl_gene_id,
type = "ensembl_gene_i…
-
Hi, great effort maintaining the Ensembl releases for Bioconductor!
I was wondering if it makes sense to, in addition to the current Ensembl `GRCh38` release, also have _AnnotationHub_ entries for …
-
### Aims/objectives.
What if we use *e.g.* Ensembl 110 (for sequence context, annotation in general such as features, gene assigment, and complementing RBP annotation) and link reported sites to Ense…
-
I made a strange observation. When I see the PlasmoDB gene Database, I see that there are `5254` genes but when using Biomart, I get only `4903` genes. Various characterized genes such as `"PBANKA_010…
-
Hi,
I‘m seeking for your kindly help. I tried to used SingleR in Stereopy to annotate the cell for saw8 output and my ref is BlueprintEncodeData.h5ad from SingleR. The code is as below, just like yo…