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Dear Author,
Thank you for your outstanding work on CLEAN. In my current research, I am attempting to design enzyme proteins from scratch and using CLEAN to predict EC numbers. At what confidence t…
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Start to try Enzyme in Enzyme explorer. I found it does not compile when a runtime size container is involved, e.g. std::vector, as in the following example,
double dprod(const std::vector& v) {
…
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Hi @grassoste, you mentioned that you wanted to discuss a case where a Golden Gate assembly would yield a product where all the backbones are ligated together. You mentioned that you had a minimal exa…
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Hi,
i installed model anf run dl_interface_design.py with a pdb generated by RFdiffusion, then i got this error:
Attempting pose: /home/fyy/Desktop/input/pdb/design_enzyme_0.pdb
Struct with tag /ho…
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Currently the functions do not have docstrings, and it's hard to understand how to use them.
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Hi,
I want to dock a cofactor-substrate pair into several designed enzyme pocket (no metal). What I found was that the cofactor usually get a good pose while the substrate not. So I'm wondering:
…
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Hey there!
I've been using your packages to work on an inverse design problem for a paper (and my thesis) with great success. I'm trying to squeeze some more performance out of the solver, though. …
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test.keepX = list (
nitrogen = c(1:5),
enzyme = c(1:4),
soil = c(1:3),
otu = c(seq(100, 700, 10))
)
t1 = proc.time()
…
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Dear Memote Development Team,
I hope this message finds you well. I am currently working with enzyme-constrained metabolic models and was wondering if Memote supports the evaluation of these types …
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| Metadata | |
| -------- | --- |
| Owner(s) | @ZuseZ4 |
| Team(s) | [compiler](http://github.com/rust-lang/compiler-team), [lang](http://github.com/rust-lang/lang-team) |
| Goal…