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In your github create tickets for the questionable enzymes. @mtiemeyer0919 will recruite some experts (#1260) to help with the resolving of these issues.
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## Describe the desired feature/enhancement
I'd like the ability to use many more restriction sites much like biopython's Restriction package.
### Is your feature request related to a problem?
…
rmcl updated
2 months ago
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I was trying to perform docking between HDAC enzymes and HDACi. HDACi are supposed to chelate or form two bonds with the zinc present in the HDAC enzymes. However, once I perform Docking using autodoc…
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Hi, it appears that I am encountering an issue while training a model on the syn-balanced and enzymes datasets.
In both cases, the training process seems to be running indefinitely, and the outputs…
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Maybe try to set up a meeting?
Also ask if she has more contacts outside of the university who we could chat to?
Speakers for people running plants? What practicalities?
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```
from Bio.Restriction import AatII, ZraI
from pydna.dseq import Dseq
s = Dseq("GACGTC")
s.cut(AatII)
# (Dseq(-5)
# GACGT
# C,
# Dseq(-5)
# C
# TGCAG)
s.cut(ZraI)
# (D…
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We would like to map the enzymes in Sandbox to reactions in Rhea. One possible pathway:
* Enzymes in Sandbox have UniProtAcc
* From UniProt get the EC number for this protein
* With the EC number w…
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Hi, thank you for the great package and documentation. I would like to simulate a Type2s-like assembly where the acceptor and the inserts are digested by different enzymes. In other words, the accepto…
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Issues in lab 7:
- catalase/temperature directions do not include incubation time!
- bubble height measurement directions may be unclear?
- need to add molecular diagram illustrating enzyme activ…
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### Setup
I am reporting a problem with Biopython 1.81, Python 3.8.17, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_impleme…