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This ticket keeps track of existing eQTL fine mapping methods -- please use new comment for additional references so that I can be notified to add here and to my mendeley:
1. Davis, Joe R., et al.…
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Dear Marc Jan Bonder,
I am following your paper published in Genome Biology (2021) to perform cell-type specific sc-eQTL mapping. In the paper, you mentioned a model including two random effects (k…
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C:\Work>java -Xmx2g -jar .\emp\eqtl-mapping-pipeline-1.1.16-SNAPSHOT-dist.jar
no main manifest attribute, in .\emp\eqtl-mapping-pipeline-1.1.16-SNAPSHOT-dist.
jar
the all-in-one jar file has no mani…
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Hello! I am currently working on eQTL fine-mapping analysis with susieR. I have already mapped eQTLs and performed conditional eQTL mapping with QTLtools, which provided me the summary statistics dat…
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Hi @mkanai
Thanks for your amazing work **_Insights from complex trait fine-mapping across diverse populations_**. I have a simple question regarding this work, because I couldn't find the other a…
Ojami updated
2 years ago
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Hi Bryce and Graham,
I plan to use WASP with input file of `combined_test.py`/`fit_as_coefficients.py`/`fit_bnb_coefficients.py` prepared by myself. So that I am looking into files at `examples/exa…
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Hi Chris,
Thanks for making this fantastic package!
I am working on the colocalization analysis with fine mapping using eQTL and GWAS. And I got some questions when I use this package.
Curre…
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Hi,
Thank you very much for sharing such an impressive work. I would like to run MR-JTI analysis but I don't know how to obtain data from eQTL, I mean beta, se and p-value. In addition, I thought t…
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Hi
I have got an eQTL summury resutls from fastqtl (I have in sample LD matrix, variance of penotype Y) and want to do a fine-mapping task in furthur, I want to know
1. whether the "slope" an…
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This is a new iteration of the data, making #3567 obsolete:
```
❯ gsutil ls gs://ot_orchestration/releases/24.10_freeze2/
gs://ot_orchestration/releases/24.10_freeze2/locus_to_gene_gold_standard.json…