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Hi，Error happend! Command 'regtools junctions extract -i 5 -I 10000000‘ is in scripts/scanexitron/ScanExitron.py.
I checked the usage if 'regtools junctions extract'
I checked the documentation fo…
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Hi Carlos,
Would you please share how you generate the protein sequences derived from frameshift caused by exitron events? You can not access exitron derived peptides from MS raw data if you do not…
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Hi there,
Could you please provide a detailed workflow for cptac.py identifying exitron-derived polypeptides? Thanks in advance.
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Hi, I'm new to snakemake, and have no idea of submitting Scanneo2 jobs to HPC. Any instructions would be very helpful! Thanks!
Regards,
Xiao
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Hi,
I have been trying to run the tool on a BAM file which is aligned by STAR to b37 and has duplicates marked. When I run the tool, I get the following error. Is there a way to debug this error?
…
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Hi there,
I try to run the cptac.py [https://github.com/ylab-hi/ScanExitron/blob/master/Applications/cptac.py], in which MSGFPlusAdapter, PeptideIndexer, IDMerger, FalseDiscoveryRate, IDFilter and …
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Hi.
The width of a range is usually calculated by `end - start` in 0-start half-open system.
May I ask why the exitron length in `scanExitron.py line215` is called by `length-1 ` ?
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Hello,
I am trying to use ScanExitron. However, it showed the error.
Junctions intersect with CDS
Junctions intersect with CDS finished!
Traceback (most recent call last):
File "/root/minico…
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I've installed all required packages for ScanExitron.py. When I give a try on the test file, it returns with error message as follow:
`tomas@tomas-virtual-machine:~/ScanExitron/tests$ python ~/Sca…
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Hi there,
An error occurred when I use ScanExitron to analyze test data in the packages. Have you met this problem previously? Any suggestions? Thanks.
Error happened!: Command 'regtools juncti…