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We are currently using canine cDNA to create a generic exome sketch. Each exome kit seems to have its own range of possible enrichment e.g. Agilent SureSelect achieves 45-75% coverage, Nimblegen Exome…
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Custom app for Webtools that handles Index Plate Management for CLE.
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- 2D barcodes will change, but indexes stay the same in each well
- exome master tray is static, gets used only once, the ali…
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Hi, I'm running Regenie Step2 on UK biobank RAP using swiss army knife.
This is my code:
length=23
start=1
for (( j=${start}; j
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I have whole exome sequencing data from tumor and their matched normal samples. Can I use oncoanalyser to process this data e.g. by setting the mode to wgts?
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#### What data file(s) does this issue pertain to?
histologies.tsv
#### What release are you using?
v15
#### Put your question or report your issue here.
For `RNA_library`, the histol…
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New libraries in CO2 – these would be really good for task forces
genetic outliers (non-Finns in PCA) (Mitja/Arto would know where to find the list of these)
individuals with chip genotyping (~433K - …
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Hi,
I was wondering if the package can also be used for deep-sequencing whole-exome data. Is there any drawback in applying the package to this kind of data?
Best wishes,
Carla
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For WGS run with full dataset.
```
singularity exec --bind /fs1 /fs1/resources/containers/verifybamid2_2.0.1.sif \
verifybamid2 \
--SVDPrefix /fs1/resources/ref/hg38/VerifyBamID/resource…
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#### Which new datasets are being added with this release?
#### What is the sample breakdown (number of WGS, WXS, RNA-Seq, Panel, Methylation, other)?
https://d3b.atlassian.net/browse/BIXU-3767
…
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**Describe the bug**
Dear bamtocov team,
I have human WES data and am trying to run bamtocov. After 6 hours, not even half is done/calculated, even when using 24 threads. Maybe I am missing somet…