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Hi, I've generated contact heatmaps successfully from mcool files.
I wonder if there is a way to add gene annotations to the generated heatmaps?
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# Statement of request
From an email of Jonathan's:
> I've been seeing in a number of places people using GO annotations to classify general types of genes/proteins.
>
> We have of course HGNC,…
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# Tissue - Gene Annotation
Tissue-gene specificity app currently only answers "lookup" one-hops where one node is populated with curies. We need to extend this to also consider annotation one-hops wh…
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We use the in-silico-saturation tables with every position annotated with IntOGen features as a db for RankDM and RulesDM.
At the moment, I run the `annotates/gene.py` script to generate any missin…
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Motivated by https://github.com/dhimmel/gene-ontology/issues/5
@NegarJanani to attempt to update this repo, you can:
1. install the conda environment
2. follow the readme execution command
Y…
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Hi @UCDNJJ ,
Regarding the cell type annotation table, I have two questions:
(1). In table "HMBA_Human_BG_annotation", you only provided marker genes for the level 4 cluster (Group). The marker ge…
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Hi Gerry,
I get that Panstripe's main goal is to model the gene exchange rates, but would it be straightforward to get an idea of the function of the exchanged genes? I'm thinking of listing annota…
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### Description of feature
Dear all
I just found out that in commit https://github.com/nf-core/scrnaseq/commit/aae5fc5f618d1a4ccd40428d14050d838876f7fe we moved away from having ensembl_gene_ids a…
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When I click the mouse in the box for the Gene Product field, a list of gene product symbols & IDs that have been used in the model shows up in the dropdown list of autocomplete options. I can use the…
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https://www.ncbi.nlm.nih.gov/research/pubtator3/publication/30301880?text=PMC6177401
https://www.ncbi.nlm.nih.gov/research/pubtator3-api/publications/export/biocxml?pmids=30301880&full=true
Take t…