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Here is also a short introduction for gene finding!
http://www.cs.us.es/~fran/students/julian/gene_finding/gene_finding.html
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Dear authors,
I attempted to filter genes based on variance using the following code:
> adata = sc.read_h5ad(expr_path)
> adata.var_names_make_unique()
> sc.pp.filter_cells(adata, …
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Hello,
I am using anaconda3 on a Windows10 machine with Spyder interface to run Stream. When I try to use my data to identify Variable genes, I get the following warning and then no variable genes …
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Have you loaded the SQANTI3.env conda environment?
- [X] I have loaded the SQANTI3.env conda environment
### …
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Hi,
I am wondering whether TOGA can also be used to estimate gene age (when different genes appeared in the tree). I know gene_age-dating pipeline (https://github.com/Zhanglab-IOZ/SBP_age-dating/b…
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Hi, thanks for your great work. I wonder if we need to correct the batch effects of these spatial transcriptomic data or not. Thanks a lot!
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Dear all,
When I use the gbk result generated by the PROKKA software as an antismash input, the following warnings and errors are displayed:
```
WARNING 27/08 09:38:24 Regenerating translati…
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The tutorial section entitled "Finding genes that change as a function of pseudotime" helps to find which genes change using pseudotime, but all over the graph. When I tried this approach I received …
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Hello! Thank you so much for this package. I would like to run svds using the BPCells wrapper function on a matrix containing 9,096 genes and 4,188,533 cells. I followed the workflow outlined in the v…
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[config_mApple2_gRNA_100919.txt](https://github.com/zhangchonglab/CRISPRi-functional-genomics-in-prokaryotes/files/3714579/config_mApple2_gRNA_100919.txt)
first of all, nice tool!. I have been tryi…