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Dear Augustus Team,
I am writing to inquire about an issue I have encountered with gene models generated by Augustus.
In the results from Augustus, I have noticed that many gene models do not st…
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I have used identical RNA-seq data and protein sequences as inputs for the BRAKER to predict gene models for eight different varieties of the same species.
However, the number of gene models produce…
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# Context
See the conversation in [**cell-science-census**](https://czi-sci.slack.com/archives/C048BN7K6U8/p1711540426286249).
@pablo-gar requests that the length for "spike-in" which is [alread…
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**Addition of Algorithm:**
My name is Matthew Marino. I am a CFDE GlyGEN summer intern working under Jeet Vora and Rene Ranzinger. I am currently trying to create multiomics workflows starting with…
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Hi, I recently used isoquant(version 3.4.1) to detect isoforms from multiple samples. But the results are a little odd. Below are my quaetions:
1. There are 167413 transcripts in `OUT.transcript_mod…
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### Ask away!
Thank you very much for creating a great workflow!
I am doing my analysis using non-model organisms with incomplete gene models. gffcompare seems to classify many transcripts as clas…
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Is there a way to pass in a non-custom genome build in the read_coldata() step ?
My reads are aligned to a specific mouse strain genome but it is not the standard mm build.
Thanks.
jcm6t updated
3 hours ago
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We have a gene set derived from the [Nanostring nCounter PanCancer IO 360™ Panel](https://nanostring.com/products/ncounter-assays-panels/oncology/pancancer-io-360/). It's possible to download the gene…
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Hello,
I am trying to run burden testing based on four cohorts for non-coding variants, such as downstream variants using regenie. I have a few questions:
I am getting "Number of ignored tests d…
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Hi
**Are you using the latest release?**
Funannotate v1.8.7
**Describe the bug**
```
[Jul 14 09:23 PM]: OS: Linux Mint 20.2, 48 cores, ~ 132 GB RAM. Python: 3.7.12
[Jul 14 09:23 PM]: Runnin…