-
### Description of the bug
Hello again!
I am encountering an issue while running the samurai pipeline in Nextflow.
After inspecting the log file , i think that the pipeline attempts to access…
-
Hello the genome properties are really great.
I wonder if it is possible to use them offline in a command line script or so. Could you point me to which pearl script I have to use?
-
Hi Team
I have faced a perplexing issue with all bigwig files loading succesfully (and well-formated with colours/caling) on IGV versions 2.17 (I tested 2.17.0, 2.17.4 and 2.18.2).
As an example…
-
Recently upgraded IGV from 2.17.4 to 2.18.4. With this update, we noticed that IGV session made with whole transcriptome bam files, would not load correctly.
They would load initially, but any sub…
-
For checking:
```
PMID:1482118 | Genetics of the fission yeast Schizosaccharomyces pombe.
PMID:7011176 | Genetics of the fission yeast Schizosaccharomyces pombe.
PMID:9439701 | Identif…
-
Hello,
is this repo still active?
I found some problems building the docker:
## Problem1 (probably solved) : Package python-software-properties not available
```
$ git clone https://github…
-
I created my own chromsize.tsv:
it looks like
Chromosome Start End
0 chr1 0 248956422
1 chr2 0 242193529
2 chr3 0 198295559
3 chr4 0 19…
-
Consider using the individual, sample, metadata, and variant core APIs as templates for a genotype + phenotype query language.
For example, we can ask for information about alleles in a specific coho…
-
Roadmap:
- [ ] add syngularity contaner for interproscan
- [ ] use pygenprop instead of genome properties
- [ ] make pygeneprop conda package
- [ ] add rules for pygenprop
- [ ] add fast ge…
-
Dear authors:
I am using autoAugTrain.pl to train a new model for a reference genome, but I met an error:
"augustus: ERROR Properties::getProperty(): cannot convert value "#" of key "/Constant/opalp…